PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400028763
Common NameLOC102605073
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 554aa    MW: 60062 Da    PI: 7.4598
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400028763genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.51.8e-30299357259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+a+d +++++tYeg Hnh+
  PGSC0003DMP400028763 299 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCADDRTILITTYEGAHNHP 357
                           7*********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-33283359IPR003657WRKY domain
SuperFamilySSF1182908.11E-28291359IPR003657WRKY domain
PROSITE profilePS5081129.562293359IPR003657WRKY domain
SMARTSM007747.9E-37298358IPR003657WRKY domain
PfamPF031061.5E-26300357IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MDKGWGLTLE TSSSNSDRAG FFKNKPVFGF NLSPKYNAGE MFSSSDEKRS IVNEVDFFSD  60
KKPIVKKENS QGDNSIRTDD QFVVNTGLQL VTANAGSDQS TVDDGVSSEV LEDKRAKIQQ  120
LAQLQVELER MNSENQRLKG MLTQVNSSYS ALQMHLVTLM QQQQQQQLNS KTENTHPHEV  180
VGAKSDEEKK KENNGTIVPR QFMELGPSGS KVDPMDEPSH SHSSSEERTL SGSPRNNMEL  240
VSRDKAINRE ESPESESWVP NKAPKLMNSP SKPVEQSTEA TMRKARVSVR ARSEAPMISD  300
GCQWRKYGQK MAKGNPCPRA YYRCTMAVGC PVRKQVQRCA DDRTILITTY EGAHNHPLPP  360
AAMAMASTTS AAANMLLSGS MPSADGLMNT NFLARAMLPC SSNMATISAS APFPTVTLDL  420
TAQNPNGALS NYHQRINQAN PHFQFPLPAG LNHPNFAASM SAPQMPHILG QPLYNQSKFS  480
GLQISQDNIH HHPSISHDTL SAATAAITAD PNFTAALAAA ISSIIGGSHP NNGNSPMSGP  540
SSNNNNTSSF PGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-22285361176WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB7111280.0AB711128.1 Solanum tuberosum StWRKY16 mRNA for transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006348143.10.0PREDICTED: probable WRKY transcription factor 31 isoform X1
SwissprotQ9C5191e-155WRKY6_ARATH; WRKY transcription factor 6
TrEMBLM1BCZ20.0M1BCZ2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000424000.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9452492
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.11e-129WRKY family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]